PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G170200.1
Common NameB456_011G170200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 219aa    MW: 24698.4 Da    PI: 7.923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G170200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.42.4e-111381811050
             G2-like  10 LHerFve.aveqLGGs..ekAtPktilelmkvkgLtlehvkSHL 50 
                         LHe+ ++ av ++ G+  ++AtPk+++elm+v+gLt+++vkSH 
  Gorai.011G170200.1 138 LHECGLSyAVVSIMGPqsNVATPKQMRELMQVDGLTNDEVKSHS 181
                         56665533454444541268***********************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-7149181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSPHGTSGSR HINQFPQDTQ TDGYVTARNP YVATQVNISF SNTPVPVIDI PPIQRRLETP  60
YPFLIFVSFF YPHRFLLFFY RYCRSVLISS TFITNPQHCL HRRPISATSD ECCSVQLIDG  120
DGSFNGTGIE SFIKEVKLHE CGLSYAVVSI MGPQSNVATP KQMRELMQVD GLTNDEVKSH  180
SFMSRCLVSV HYFGLKLLVV GICQWKQPCF CSCIPFFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431592e-77AC243159.1 Gossypium hirsutum clone MX146F17-jlq, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457664.11e-78PREDICTED: uncharacterized protein LOC105778495
TrEMBLA0A0D2RNP61e-162A0A0D2RNP6_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1799626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-09G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]